Publication - Research and analysis

Development of a combined marine and terrestrial biodiversity indicator: research

A commissioned research report on development of a new single high level biodiversity indicator covering marine and terrestrial (including freshwater) habitats to measure trends and replace the existing biodiversity indicator in the National Performance Framework.

106 page PDF

1.3 MB

106 page PDF

1.3 MB

Contents
Development of a combined marine and terrestrial biodiversity indicator: research
12. References

106 page PDF

1.3 MB

12. References

Aslaksen, I., Nybø, S., Framstad, E., Garnåsjordeta, P.A. and Skarpaas, O. 2015. Biodiversity and ecosystem services: The Nature Index for Norway. Ecosystem Services, 12, 108-116.

Bart, J., and S.P. Klosiewski. 1989. Use of presence-absence to measure changes in avian density. The Journal of Wildlife Management 53: 847-852.

BirdLife International. 2015. European Red List of Birds. Luxembourg: Office for Official Publications of the European Communities.

Bobbink, R., M. Hornung, and J. G. Roelofs. 1998. The effects of air‐borne nitrogen pollutants on species diversity in natural and semi‐natural European vegetation. Journal of Ecology 86:717-738.

Boughey, K., and Langton, S. 2017. UK Biodiversity Indicators 2017: C8. Mammals of the wider countryside (bats). Technical background document. [Online]. [Accessed 4 April 2019].

Bubb, P., S. Butchart, B. Collen, H. Dublin, V. Kapos, C. Pollock, S. Stuart, and J.-C. Vié. 2009. IUCN Red List Index: Guidance for national and regional use.

Buckland, S. T., Y. Yuan, and E. Marcon. 2017. Measuring temporal trends in biodiversity. AStA Advances in Statistical Analysis 101:461-474.

Buckland, S., A. Magurran, R. Green, and R. Fewster. 2005. Monitoring change in biodiversity through composite indices. Philosophical Transactions of the Royal Society B: Biological Sciences 360:243-254.

Buckley, H.L., and R. P. Freckleton. 2010. Understanding the role of species dynamics in abundance–occupancy relationships. Journal of Ecology 98:645-658.

Burns, F., M.A. Eaton, D.B. Hayhow, C. Outhwaite, N. Al-Fulaij,T. August, K. Boughey, T. Brereton, A. Brown, D. Bullock, T. Gent, K. Haysom, N.J. Isaac, D. Johns, C. Macadam, F. Mathews, D.Noble, G. Powney, D. Sims and R.D. Gregory. 2018. An assessment of the state of nature in the United Kingdom: A review of findings, methods and impact. Ecological Indicators. 94:226-236. 10.1016/j.ecolind.2018.06.033.

Butchart, S. H., H. R. Akçakaya, J. Chanson, J. E. Baillie, B. Collen, S. Quader, W. R. Turner, R. Amin, S. N. Stuart, and C. Hilton-Taylor. 2007. Improvements to the red list index. PloS one 2:e140.

Certain G, Skarpaas O, Bjerke J-W, Framstad E, Lindholm M, Nilsen J-E, et al. 2011. The Nature Index: A General Framework for Synthesizing Knowledge on the State of Biodiversity. PLoS ONE 6(4)

Charra, M. & Sarasa, M. 2018. Applying IUCN Red List criteria to birds at different geographical scales: similarities and differences. Animal Biodiversity and Conservation 41: 75-95. 10.32800/abc.2018.41.0075.

Collen, B., J. Loh, S. Whitmee, L. McRae, R. Amin, and J. E. Baillie. 2009. Monitoring change in vertebrate abundance: the Living Planet Index. Conservation Biology 23:317-327.

Dale, V. H., and S. C. Beyeler. 2001. Challenges in the development and use of ecological indicators. Ecological indicators 1:3-10.

Dennis, E. B., T. M. Brereton, B. J. T. Morgan, R. Fox, C. R. Shortall, T. Prescott, and S. Foster. 2019. Trends and indicators for quantifying moth abundance and occupancy in Scotland. Journal of Insect Conservation.

Department of Environment, Food and Rural Affairs. 2014. Marine Strategy Part Two: UK Marine Monitoring Programmes. July 2014. [Online]. [Accessed 4 April 2019].

Department of Environment, Food and Rural Affairs. 2018a. UK Biodiversity Indicators 2018.

Department of Environment, Food and Rural Affairs. 2018b. A green future: our 25-year plan to improve the environment.

Department of Environment, Food and Rural Affairs. 2018c. Measuring environmental change – draft indicators framework for the 25 Year Environment Plan Draft for discussion

Department of the Environment Northern Ireland. 2015. Valuing nature – a biodiversity strategy for Northern Ireland to 2020.

Department of the Environment Northern Ireland. 2018. Northern Ireland Environmental Statistics Report May 2018. [Accessed 4 April 2019].

Eaton, M. A., F. Burns, N. J. Isaac, R. D. Gregory, T. A. August, K. E. Barlow, T. Brereton, D. R. Brooks, N. Al Fulaij, and K. A. Haysom. 2015b. The priority species indicator: measuring the trends in threatened species in the UK. Biodiversity 16:108-119.

Eaton, M., and Noble, D. 2018. UK Biodiversity Indicators 2018: Technical background document: The wild bird indicator for the UK and England. Report to JNCC.

Eaton, M., N. Aebischer, A. Brown, R. Hearn, L. Lock, A. Musgrove, D. Noble, D. Stroud, and R. Gregory. 2015a. Birds of Conservation Concern 4: the population status of birds in the UK, Channel Islands and Isle of Man. British Birds 108:708-746.

Efron, B. 1982. The jackknife, the bootstrap, and other resampling plans. Siam.

Environment (Wales) Act 2016. [Online]. [Accessed 4 April 2019].

European Commission. 2012. Our life insurance, our natural capital: an EU biodiversity strategy to 2020

European Union. [Online]. [Accessed 4 April 2019].

Ewing, S.R., Rebecca, G.W., Heavisides, A., Court, I.R., Lindley, P., Ruddock, M., Cohen, S. and Eaton, M.A., 2011. Breeding status of Merlins Falco columbarius in the UK in 2008. Bird study, 58(4): 379-389.

Fahrig, L., V. Arroyo-Rodríguez, J. R. Bennett, V. Boucher-Lalonde, E. Cazetta, D. J. Currie, F. Eigenbrod, A. T. Ford, S. P. Harrison, and J. A. Jaeger. 2019. Is habitat fragmentation bad for biodiversity? Biological Conservation 230:179-186.

Feest, A., T. D. Aldred, and K. Jedamzik. 2010. Biodiversity quality: a paradigm for biodiversity. Ecological indicators 10:1077-1082.

Firbank, L. G., S. Petit, S. Smart, A. Blain, and R. J. Fuller. 2007. Assessing the impacts of agricultural intensification on biodiversity: a British perspective. Philosophical Transactions of the Royal Society B: Biological Sciences 363:777-787.

Flávio, H., P. Ferreira, N. Formigo, and J. C. Svendsen. 2017. Reconciling agriculture and stream restoration in Europe: A review relating to the EU Water Framework Directive. Science of the Total Environment 596:378-395.

Freeman, S. N., N. J. B. Isaac, P. T Besbeas, E. B. Dennis and B. J. T. Morgan. 2020. A generic method for estimating and smoothing multispecies biodiversity indices, robust to intermittent data. Journal of Agricultural, Biological and Environmental Statistics.

GEO BON (2017) Strategy for development of Essential Biodiversity Variables. Version 2.0. GEO BON.

Goulson, D., E. Nicholls, C. Botías, and E. L. Rotheray. 2015. Bee declines driven by combined stress from parasites, pesticides, and lack of flowers. Science 347:1255957.

Greenstreet, S. P., A. G. Rossberg, C. J. Fox, W. J. Le Quesne, T. Blasdale, P. Boulcott, I. Mitchell, C. Millar, and C. F. Moffat. 2012. Demersal fish biodiversity: species-level indicators and trends-based targets for the Marine Strategy Framework Directive. ICES Journal of Marine Science 69:1789-1801.

Greenstreet, S. P., S. I. Rogers, J. C. Rice, G. J. Piet, E. J. Guirey, H. M. Fraser, and R. J. Fryer. 2010. Development of the EcoQO for the North Sea fish community. ICES Journal of Marine Science 68:1-11.

Gregory, R.D., D. Gibbons, A. Impey, and J. Marchant. 1999. Generation of the headline indicator of wild bird populations. BTO Research report 221.

Gregory, R.D., A. van Strein, P. Vorisek, G.W. Gmelig Meyling, D.G. Noble, R.P.B. Foppen and D.W. Gibbons. 2005. Developing indicators for European birds. Phil. Trans. R. Soc. B, 360:260-288.

Hayhow, D., F. Burns, M. Eaton, N. Al Fulaij, T. August, L. Babey, L. Bacon, C. Bingham, J. Boswell, and K. Boughey. 2016. State of Nature 2016.

Heink, U., and I. Kowarik. 2010. What criteria should be used to select biodiversity indicators? Biodiversity and Conservation 19:3769-3797.

Hill, M.O. 2011. Local frequency as a key to interpreting species occurrence data when recording effort is not known. Methods in Ecology and Evolution, 3:195-205.

Hill, M.O., C.D. Preston, and D.B. Roy. 2004. PLANTATT – Attributes of British and Irish Plants: Status, Size, Life History, Geography and Habitats. CEH, Huntingdon.

Holdich, D., J. James, C. Jackson, and S. Peay. 2014. The North American signal crayfish, with particular reference to its success as an invasive species in Great Britain. Ethology Ecology & Evolution 26:232-262.

Hooper, D. U., E. C. Adair, B. J. Cardinale, J. E. Byrnes, B. A. Hungate, K. L. Matulich, A. Gonzalez, J. E. Duffy, L. Gamfeldt, and M. I. O'Connor. 2012. A global synthesis reveals biodiversity loss as a major driver of ecosystem change. Nature 486:105.

Horváth, Z., R. Ptacnik, C. Vad, and J. Chase. 2019. Habitat loss over six decades accelerates regional and local biodiversity loss via changing landscape connectance. Ecology Letters. DOI:10.1111/ele.13260

Hulme, P. E., A. Pauchard, P. Pyšek, M. Vilà, C. Alba, T. M. Blackburn, J. M. Bullock, M. Chytrý, W. Dawson, and A. M. Dunn. 2015. Challenging the view that invasive non-native plants are not a significant threat to the floristic diversity of Great Britain. Proceedings of the National Academy of Sciences 112:E2988-E2989.

Isaac, N. J., A. J. van Strien, T. A. August, M. P. de Zeeuw, and D. B. Roy. 2014. Statistics for citizen science: extracting signals of change from noisy ecological data. Methods in Ecology and Evolution 5:1052-1060.

International Union for Conservation of Nature. 2012a. IUCN Red List Categories and Criteria, Version 3.1. 2nd edition. Gland, Switzerland and Cambridge, UK.

International Union for Conservation of Nature. 2012b. Guidelines for application of IUCN red list criteria at regional and national levels: version 4.0. IUCN Gland, Switzerland and Cambridge, UK.

Katsanevakis, S., I. Wallentinus, A. Zenetos, E. Leppäkoski, M. E. Çinar, B. Oztürk, M. Grabowski, D. Golani, and A. C. Cardoso. 2014. Impacts of invasive alien marine species on ecosystem services and biodiversity: a pan-European review. Aquatic Invasions 9:391-423.

Klvanova, A., Voříšek, P., Gregory, R., Van Strien, A. & Meyling, A. (2009). Wild birds as indicators in Europe: latest results from the Pan-European Common Bird Monitoring Scheme (PECBMS). Avocetta 33: 7-12..

Lambert, S. J., and A. J. Davy. 2011. Water quality as a threat to aquatic plants: discriminating between the effects of nitrate, phosphate, boron and heavy metals on charophytes. New Phytologist 189:1051-1059.

Macdonald, A. J. 2003. Assessing the quality of plant communities in the uplands. Botanical Journal of Scotland 55:111-123.

MacDonald, A. J. 2010. Testing the reliability of assessment of land management impacts on Scottish upland vegetation. Plant Ecology & Diversity 3:301-312.

Mace, G. M., M. Barrett, N. D. Burgess, S. E. Cornell, R. Freeman, M. Grooten, and A. Purvis. 2018. Aiming higher to bend the curve of biodiversity loss. Nature Sustainability 1:448.

Martin, P., R. E. Green, and A. Balmford. 2019. Is biodiversity as intact as we think it is? PeerJ Preprints 7:e27575v27571.

Mindel, B. L., F. C. Neat, T. J. Webb, J. L. Blanchard, and H. e. J. Watson. 2017. Size-based indicators show depth-dependent change over time in the deep sea. ICES Journal of Marine Science 75:113-121.

Mitchell, R., J. Beaton, P. Bellamy, A. Broome, J. Chetcuti, S. Eaton, C. Ellis, A. Gimona, R. Harmer, and A. Hester. 2014. Ash dieback in the UK: a review of the ecological and conservation implications and potential management options. Biological Conservation 175:95-109.

Moore, N., S. Roy, and A. Helyar. 2003. Mink (Mustela vison) eradication to protect ground‐nesting birds in the Western Isles, Scotland, United Kingdom. New Zealand Journal of Zoology 30:443-452.

Natural Resources Wales. 2016. State of Natural Resources Report (SoNaRR): Assessment of the sustainable Management of Natural Resources. Technical Report. Natural Resources Wales.

Natural Resources Wales. 2018. Briefing note: A new baseline of the area of semi-natural habitat in Wales for Indicator 43

Newbold, T., L. N. Hudson, A. P. Arnell, S. Contu, A. De Palma, S. Ferrier, S. L. Hill, A. J. Hoskins, I. Lysenko, and H. R. Phillips. 2016. Has land use pushed terrestrial biodiversity beyond the planetary boundary? A global assessment. Science 353:288-291.

Newsom, S.E., Ockendon, N., Joys, A., Noble, D.G. & Baillie, S.R. 2009. Comparison of habitat-specific trends in the abundance of breeding birds in the UK. Bird Study, 56:233-243.

Noble, D., S. Newson, and R. Gregory. 2004. Approaches to dealing with disappearing and invasive species in the UK's indicators of wild bird populations. A report by the BTO and RSPB under contract to Defra (Wild Bird Indicators).

OSPAR (2017a). [Online]. [Accessed 4 April 2019]. Seal Abundance and Distribution

OSPAR (2017b). [Online]. [Accessed 4 April 2019]. Abundance and Distribution of Cetaceans

OSPAR (2017c). [Online]. [Accessed 4 April 2019]. Marine Bird Abundance

OSPAR (2017d). [Online]. [Accessed 4 April 2019]. Recovery in the Population Abundance of Sensitive Fish Species

OSPAR (2017e). [Online]. [Accessed 4 April 2019]. Condition of Benthic Habitat Communities: Subtidal Habitats of the Southern North Sea

Outhwaite, C.L., Powney, G.D., August, T.A., Chandler, R.E., Rorke, S., Pescott, O., Harvey, M., Roy, H.E., Fox, R., Walker, K., Roy, D.B., Alexander, K., Ball, S., Bantock, T., Barber, T., Beckmann, B.C., Cook, T., Flanagan, J., Fowles, A., Hammond, P., Harvey, P., Hepper, D., Hubble, D., Kramer, J., Lee, P., MacAdam, C., Morris, R., Norris, A., Palmer, S., Plant, C., Simkin, J., Stubbs, A., Sutton, P., Telfer, M., Wallace, I., Isaac, N.J.B. 2019. Annual estimates of occupancy for bryophytes, lichens and invertebrates in the UK (1970-2015). NERC Environmental Information Data Centre.

Outhwaite, C. L., R. E. Chandler, G. D. Powney, B. Collen, R. D. Gregory, and N. J. Isaac. 2018. Prior specification in Bayesian occupancy modelling improves analysis of species occurrence data. Ecological indicators 93:333-343.

Pereira, H. M., Ferrier, S., Walters, M., Geller, G. N., Jongman, R. H. G., Scholes, R. J., Bruford, M. W., Brummitt, N., Butchart, S. H. M., Cardoso, A. C., Coops, N. C., Dulloo, E., Faith, D. P., Freyhof, J., Gregory, R. D., et al. 2013. Essential biodiversity variables. Science 339:277-278.

Perkins, A.J., Maggs, H.E., Watson, A., & Wilson, J.D., 2011. Adaptive management and targeting of agri‐environment schemes does benefit biodiversity: a case study of the corn bunting Emberiza calandra. Journal of Applied Ecology 48:514-522.

Purvis, A., T. Newbold, A. De Palma, S. Contu, S. L. Hill, K. Sanchez-Ortiz, H. R. Phillips, L. N. Hudson, I. Lysenko, and L. Börger. 2018. Modelling and projecting the response of local terrestrial biodiversity worldwide to land use and related pressures: the PREDICTS project. Advances in Ecological Research 58:201-241.

Redhead, J., Fox, R., Brereton, T., et al., 2016. Assessing species' habitat associations from occurrence records, standardised monitoring data and expert opinion: a test with British butterflies. Ecological Indicators. 62:271–278.

Renwick, A.R., Johnston, A., Joys, A., Newson, S.E., Noble, D.G. & Pearce-Higgins, J.W. 2012. Composite bird indicators robust to variation in species selection and habitat specificity. Ecological Indicators 18:200–207.

Rombouts, I., N. Simon, A. Aubert, T. Cariou, E. Feunteun, L. Guérin, M. Hoebeke, A. McQuatters-Gollop, F. Rigaut-Jalabert, and L. Artigas. 2019. Changes in marine phytoplankton diversity: Assessment under the Marine Strategy Framework Directive. Ecological indicators 102:265-277.

Scholes, R. J., and R. Biggs. 2005. A biodiversity intactness index. Nature 434:45.

Scotland's environment. [Online]. [Accessed 4 April 2019]. Indicator 6: Freshwater

Scottish Biodiversity Forum. 2004. Scotland's Biodiversity: It's in Your Hands: a Strategy for the conservation and Enhancement of Biodiversity in Scotland: an Overview of the Implementation Plans 2005-2008. Scottish Executive.

Scottish Government. 2013. 2020 Challenge for Scotland's biodiversity: A strategy for the conservation and enhancement of biodiversity in Scotland. 2013. The Scottish Government, Edinburgh.

Scottish Natural Heritage. 2015. Trend note: Trends of otter in Scotland. [Accessed 4 April 2019].

Scottish Natural Heritage. 2017. Scotland's Biodiversity Progress to 2020 Aichi Targets. Interim Report 2017.

Scottish Natural Heritage. 2019. Scotland's Natural Capital Asset Index.

Scottish Natural Heritage. [Online]. [Accessed 4 April 2019]. Scotland's indicators

Sea Mammal Research Unit. 2015. Grey seal and harbour seal indicators for the Marine Strategy Framework Directive. Marine Scotland and Sea Mammal Research Unit.

Secretariat of the Convention on Biological Diversity. 2014. Global Biodiversity Outlook 4. Montréal.

Shannon, C.E., 1948. A mathematical theory of communication. Bell System Technical Journal 27:379-423.

Simpson, E., H. 1949. Measurement of species diversity. Nature 163:688.

Soldaat, L. L., J. Pannekoek, R. J. Verweij, C. A. van Turnhout, and A. J. van Strien. 2017. A Monte Carlo method to account for sampling error in multi-species indicators. Ecological indicators 81:340-347.

Stanbury, A., A. Brown, M. Eaton, N. Aebischer, S. Gillings, R. Hearn, D. Noble, D. Stroud, and R. Gregory. 2017a. The risk of extinction for birds in Great Britain. Br. Birds 110:502-517.

Stanbury, A., S. Thomas, J. Aegerter, A. Brown, D. Bullock, M. Eaton, L. Lock, R. Luxmoore, S. Roy, and S. Whitaker. 2017b. Prioritising islands in the United Kingdom and crown dependencies for the eradication of invasive alien vertebrates and rodent biosecurity. European Journal of Wildlife Research 63:31.

Sutherland, W. J. 2006. Ecological census techniques: a handbook. Cambridge University Press.

Tscharntke, T., A. M. Klein, A. Kruess, I. Steffan‐Dewenter, and C. Thies. 2005. Landscape perspectives on agricultural intensification and biodiversity–ecosystem service management. Ecology Letters 8:857-874.

van Strien, A. J., A. W. G. Meyling, J. E. Herder, H. Hollander, V. J. Kalkman, M. J. Poot, S. Turnhout, B. van der Hoorn, W. T. van Strien-van Liempt, and C. A. van Swaay. 2016. Modest recovery of biodiversity in a western European country: The Living Planet Index for the Netherlands. Biological Conservation 200:44-50.

van Strien, A., L. Soldaat, and R. Gregory. 2012. Desirable mathematical properties of indicators for biodiversity change. Ecological indicators 14:202-208.

Webb, T. J., and B. L. Mindel. 2015. Global patterns of extinction risk in marine and non-marine systems. Current Biology 25:506-511.

Wellbeing of Future Generations (Wales) Act 2015. [Online]. [Accessed 4 April 2019].

Welsh Government. 2015. The Nature Recovery Plan for Wales - setting the course for 2020 and beyond.

Wilson, E., Edwards, L., Judge, J., Johnston, C., Stroud, R., McLeod, C. and Bamforth, L. 2018. A Review of the Biological Recording Infrastructure in Scotland by the Scottish Biodiversity Information Forum: Enabling Scotland to be a global leader for biodiversity. Scottish Biodiversity Information Forum Commissioned Report No. 1.

WWF. 2018. Living Planet Report 2018: Aiming Higher. Grooten, M. and R. E. A. Almond (Eds). WWF, Gland, Switzerland.

Yuan, Y., S. T. Buckland, P. J. Harrison, S. Foss, and A. Johnston. 2016. Using species proportions to quantify turnover in biodiversity. Journal of Agricultural, Biological, and Environmental Statistics 21:363-381.


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