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Peer Reviewed Papers: 2011/2012

Peer Reviewed Papers 2011/12

Armstrong, J D; Millidine, K J and Metcalfe, N B (2011) 'Ecological consequences of variation in standard metabolism and dominance among salmon parr', Ecology of Freshwater Fish , 20(3), 371-376.

Berx, B; Dickey-Collas, M; Skogen, M. D; de Roeck, Y H; Klein, H; Barciela, R; Forster, R M; Dombrowsky, E; Huret, M; Payne, M; Sagarminaga, Y and Schrum, C (2011) 'Does Operational Oceanography Address the Needs of Fisheries and Applied Environmental Scientists?', Oceanography , 24(1), 166-171.

Boulcott, P and Howell, T R W (2011) The impact of scallop dredging on rocky-reef substrata. Fisheries Research 110 (3):415-420.

Brand, L E; Campbell, L and Bresnan, E (2012) Karenia: The biology and ecology of a toxic genus. Harmful Algae 14 (special issue): 156-178.

Brown, J M; Chesher, T J; Beveridge, A J; Shafiai, S H; Murray, R B O; Smyth, T A G; Bricheno, L M and Way, O G (2012) Briefing: Young Coastal Scientists and Engineers Conference 2011. Proceedings of the Institution of Civil Engineers-Maritime Engineering 165 (1):7-20.

Butler, J R A; Middlemas, S J; Graham, I M and Harris, R N (2011) 'Perceptions and costs of seal impacts on Atlantic salmon fisheries in the Moray Firth, Scotland: Implications for the adaptive co-management of seal-fishery conflict', Marine Policy , 35(3), 317-323.

Campbell, S; McBeath, A; Secombes, C; Snow, M and Collet, B (2011) 'Interferon response following infection with genetically similar isolates of viral haemorrhagic septicaemia virus (VHSV) exhibiting contrasting virulence in rainbow trout', Fish & Shellfish Immunology , 30(1), 287-294.

Capell, R; Tetzlaff, D; Malcolm I A; Hartley, A J and Soulsby C (2011) Using hydrochemical tracers to conceptualise hydrological function in a larger scale catchment draining contrasting geologic provinces. Journal of Hydrology 408 (1-2):164-177.

Chang, M X; Collet, B; Nie, P; Lester, K; Campbell, S; Secombes, C J and Zou, J (2011) 'Expression and Functional Characterization of the RIG-I-Like Receptors MDA5 and LGP2 in Rainbow Trout ( Oncorhynchus mykiss)', Journal of Virology , 85(16), 8403-8412.

Collet, B and Lester, K. (2011) Establishment of an Atlantic salmon kidney cell line with an inducible gene expression system. Journal of Biotechnology, 154 (4):209-211.

Demain, D K; Gallego, A; Jaworski, A; Priede, I G and Jones, E G (2011) 'Diet and feeding niches of juvenile Gadus morhua, Melanogrammus aeglefinus and Merlangius merlangus during the settlement transition in the northern North Sea', Journal of Fish Biology , 79(1), 89-111.

Dias, P J; Malgrange, B; Snow, M and Davies, I M (2011) 'Performance of Mussels, Mytilus edulis, Mytilus trossulus, and Their Hybrids in Cultivation at Three Scottish Lochs', Journal of the World Aquaculture Society , 42(1), 111-121.

Dias, P J; Piertney, S B; Snow, M and Davies, I M (2011) 'Survey and management of mussel Mytilus species in Scotland', Hydrobiologia , 670(1), 127-140.

Dixon, P F; Smail, D A; Algoet, M; Hastings, T S; Bayley, A; Byrne, H; Dodge, M; Garden, A; Joiner, C; Roberts, E; Verner-Jeffreys, D and Thompson, F (2012) Studies on the effect of temperature and pH on the inactivation of fish viral and bacterial pathogens. Journal of Fish Diseases 35(1): 51-64.

Ellis, J S; Gilbey, J; Armstrong, A; Balstad, T; Cauwelier, E; Cherbonnel, C; Consuegra, S; Coughlan, J; Cross, T F; Crozier, W; Dillane, E; Ensing, D; de Leaniz, C G; Garcia-Vazquez, E; Griffiths, A M; Hindar, K; Hjorleifsdottir, S; Knox, D; Machado-Schiaffino, G; McGinnity, P; Meldrup, D; Nielsen, E E; Olafsson, K; Primmer, C R; Prodohl, P; Stradmeyer, L; Vaha, J P; Verspoor, E; Wennevik, V and Stevens, J R (2011) 'Microsatellite standardization and evaluation of genotyping error in a large multi-partner research programme for conservation of Atlantic salmon ( Salmo salar L.)', Genetica , 139(3), 353-367.

Fernandes, P G; Coull, K; Davis, C; Clark, P; Catarino, R; Bailey, N; Fryer, R and Pout, A (2011) Observations of discards in the Scottish mixed demersal trawl fishery. ICES Journal of Marine Science 68 (8):1734-1742.

Fourrier, M; Heuser, S; Munro, E and Snow, M (2011) 'Characterization and comparison of the full 3 ' and 5 ' untranslated genomic regions of diverse isolates of infectious salmon anaemia virus by using a rapid and universal method', Journal of Virological Methods , 174(1-2), 136-143.

Fridjonsson, O F O; Olafsson, K; Tompsett, S; Bjornsdottir, S; Consuegra, S; Knox, D; de Leaniz, C G; Magnusdottir, S; Olafsdottir, G; Verspoor, E and Hjorleifsdottir, S (2011) 'Detection and mapping of mtDNA SNPs in Atlantic salmon using high throughput DNA sequencing', Bmc Genomics , 12.

Gallego, A; North, E W and Houde, E D (2012) Understanding and quantifying mortality in pelagic, early life stages of marine organisms - Old challenges and new perspectives Preface. Journal of Marine Systems 93:1-3.

Green, D.M; Werkman, M and Munro, L A (2012) The potential for targeted surveillance of live fish movements in Scotland. Journal of Fish Diseases 35(1): 29-37.

Green, D M; Werkman, M; Munro, L A; Kao, R R; Kiss, I Z and Danon, L (2011) 'Tools to study trends in community structure: Application to fish and livestock trading networks', Preventive Veterinary Medicine , 99(2-4), 225-228.

Greenstreet, S P R; Fraser, H M; Rogers, S I; Trenkel, V M; Simpson, S D and Pinnegar, J K (2012) Redundancy in metrics describing the composition, structure, and functioning of the North Sea demersal fish community. ICES Journal of Marine Science 69 (1):8-22.

Gurney, W S C; Bacon, P J; Speirs, D C; McGinnity, P and Verspoor, E (2012) Sea-Age Variation in Maiden Atlantic Salmon Spawners: Phenotypic Plasticity or Genetic Polymorphism? Bulletin of Mathematical Biology 74 (3):615-640.

Heath, MR; Rasmussen, J; Bailey, M C; Dunn, J; Fraser, J; Gallego, A; Hay, S J; Inglis, M and Robinson, S (2012) Larval mortality rates and population dynamics of Lesser Sandeel ( Ammodytes marinus) in the northwestern North Sea. Journal of Marine Systems 93: 47-57.

Holmes, S J; Bailey, N; Campbell, N; Catarino, R; Barratt, K; Gibb, A and Fernandes, P G (2011) Using fishery-dependent data to inform the development and operation of a co-management initiative to reduce cod mortality and cut discards. ICES Journal of Marine Science, 68 (8):1679-1688.

Hoogenboom, M O; Armstrong, J D; Miles, M S; Burton, T; Groothuis, T G G and Metcalfe, N B (2011) Implantation of cocoa butter reduces egg and hatchling size in Salmo trutta. Journal of Fish Biology, 79 (3):587-596.

Hrachowitz, M; Soulsby, C; Tetzlaff, D and Malcolm, I A (2011) 'Sensitivity of mean transit time estimates to model conditioning and data availability', Hydrological Processes , 25(6), 980-990.

Imholt, C; Malcolm, I A; Bacon, P J; Gibbins, C N; Soulsby, C; Miles, M and Fryer, R J (2011) 'Does diurnal temperature variability affect growth in juvenile Atlantic salmon Salmo salar?', Journal of Fish Biology , 78(2), 436-448.

Ivanovic, A; Neilson, R D and O'Neill, F G (2011) 'Modelling the physical impact of trawl components on the seabed and comparison with sea trials', Ocean Engineering , 38(7), 925-933.

Langton, R; Davies, I M. and Scott, B E (2011) 'Seabird conservation and tidal stream and wave power generation: Information needs for predicting and managing potential impacts', Marine Policy , 35(5), 623-630.

Malcolm, I A; Youngson, A F; Soulsby, C; Imholt, C and Fryer, R J (2011) Is Interstitial Velocity a Good Predictor of Salmonid Embryo Survival? Transactions of the American Fisheries Society, 140 (4):898-904.

Martinez, I; Jones, E G; Davie, S L; Neat, F C; Wigham, B D and Priede, I G (2011) 'Variability in behaviour of four fish species attracted to baited underwater cameras in the North Sea', Hydrobiologia , 670(1), 23-34.

Mauritzen, C; Hansen, E; Andersson, M; Berx, B; Beszczynska-Moller, A; Burud, I; Christensen, K H; Debernard, J; de Steur, L; Dodd, P; Gerland, S; Godoy, O; Hansen, B; Hudson, S; Hoydalsvik, F; Ingvaldsen, R; Isachsen, P E; Kasajima, Y; Koszalka, I; Kovacs, K M; Koltzow, M; La Casce, J; Lee, C M; Lavergne, T; Lydersen, C; Nicolaus, M; Nilsen, F; Nost, O A; Orvik, K A; Reigstad, M; Schyberg, H; Seuthe, L; Skagseth, O; Skarohamar, J; Skogseth, R; Sperrevik, A; Svensen, C; Soiland, H; Teigen, S H; Tverberg, V and Riser, C W (2011) 'Closing the loop - Approaches to monitoring the state of the Arctic Mediterranean during the International Polar Year 2007-2008', Progress in Oceanography , 90(1-4), 62-89.

Mayor, D J; Cook, K; Thornton, B; Walsham, P; Witte, U F M; Zuur, A F and Anderson, T R (2011) 'Absorption efficiencies and basal turnover of C, N and fatty acids in a marine Calanoid copepod', Functional Ecology , 25(3), 509-518.

McGinnity, P; De Eyto, E; Gilbey, J; Gargan, P; Roche, W; Stafford, T; McGarrigle, M; O'Maoileidigh, N and Mills, P (2012) A predictive model for estimating river habitat area using GIS-derived catchment and river variables. Fisheries Management and Ecology 19 (1):69-77.

Neat, F and Campbell, N (2011) Demersal fish diversity of the isolated Rockall plateau compared with the adjacent west coast shelf of Scotland. Biological Journal of the Linnean Society, 104 (1):138-147.

Needle, C L and Catarino, R (2011) Evaluating the effect of real-time closures on cod targeting. ICES Journal of Marine Science 68 (8):1647-1655.

Ondrackova, M; Matejusova, I and Grabowska, J (2012) Introduction of Gyrodactylus perccotti (Monogenea) into Europe on its invasive fish host, Amur sleeper ( Perccottus glenii, Dybowski 1877). Helminthologia 49 (1):21-26.

O'Neill, F G and Summerbell, K (2011) 'The mobilisation of sediment by demersal otter trawls', Marine Pollution Bulletin , 62(5), 1088-1097.

Pan, M; Pierce, G J; Cunningham, C O and Hay, S J (2011) 'Spatiotemporal coupling/decoupling of planktonic larvae and benthic settlement in decapods in the Scottish east coast', Marine Biology , 158(1), 31-46.

Penston, M J; McBeath, A J A and Millar, C P (2011) 'Densities of planktonic Lepeophtheirus salmonis before and after an Atlantic salmon farm relocation', Aquaculture Environment Interactions , 1(3), 225-232.

Reid, D G; Graham, N; Rihan, D J; Kelly, E; Gatt, I R; Griffin, F; Gerritsen, H D and Kynoch, R J (2011) Do big boats tow big nets? ICES Journal of Marine Science, 68 (8):1663-1669.

Russell, M; Robinson, C D; Walsham, P; Webster, L and Moffat, C F (2011) Persistent organic pollutants and trace metals in sediments close to Scottish marine fish farms. Aquaculture, 319 (1-2):262-271.

Serpetti, N; Heath, M; Armstrong, E and Witte, U (2011) 'Blending single beam RoxAnn and multi-beam swathe QTC hydro-acoustic discrimination techniques for the Stonehaven area, Scotland, UK', Journal of Sea Research , 65(4), 442-455.

Serpetti, N; Heath, M; Rose, M and Witte, U (2012) High resolution mapping of sediment organic matter from acoustic reflectance data. Hydrobiologia 680 (1):265-284.

Shephard, S; Reid, D G and Greenstreet, S P R (2011) Interpreting the large fish indicator for the Celtic Sea. ICES Journal of Marine Science, 68 (9):1963-1972.

Shutler, J D; Davidson, K; Miller, P I; Swan, S C; Grant, M G and Bresnan, E (2012) An adaptive approach to detect high-biomass algal blooms from EO chlorophyll-a data in support of harmful algal bloom monitoring. Remote Sensing Letters 3 (2):101-110.

Snow, M (2011) 'The contribution of molecular epidemiology to the understanding and control of viral diseases of salmonid aquaculture', Veterinary Research , 42.

Soares, S; Green, D M; Turnbull, J F; Crumlish, M and Murray, A G (2011) 'A baseline method for benchmarking mortality losses in Atlantic salmon (Salmo salar) production', Aquaculture , 314(1-4), 7-12.

Thrush, M A; Murray, A G; Brun, E; Wallace, S and Peeler, E J (2011) 'The application of risk and disease modelling to emerging freshwater diseases in wild aquatic animals', Freshwater Biology , 56(4), 658-675.

Tobin, D and Wright, P J (2011) 'Temperature effects on female maturation in a temperate marine fish', Journal of Experimental Marine Biology and Ecology , 403(1-2), 9-13.

Touzet, N; Lacaze, J P; Maher, M; Turrell, E and Raine, R (2011) 'Summer dynamics of Alexandrium ostenfeldii (Dinophyceae) and spirolide toxins in Cork Harbour, Ireland', Marine Ecology-Progress Series , 425, 21-33.

Turnbull, J F; Berrill, I K; Green, D M; Kaye, R; Morris, D; Murray, A G; del-Pozo, J and Shinn, A (2011) 'Applied epidemiology with examples from UK aquaculture', Aquaculture Research , 42, 21-27.

Wang, T H; Diaz-Rosales, P; Costa, M M; Campbell, S; Snow, M; Collet, B; Martin, S A M and Secombes, C J (2011) 'Functional Characterization of a Nonmammalian IL-21: Rainbow Trout Oncorhynchus mykiss IL-21 Upregulates the Expression of the Th Cell Signature Cytokines IFN-gamma, IL-10, and IL-22', Journal of Immunology, 186(2), 708-721.

Winfield, I J; Adams, C E; Armstrong, J D; Gardiner, R; Kirika, A; Montgomery, J; Spears, B M; Stewart, D C; Thorpe, J E and Wilson, W (2012) Changes in the fish community of Loch Leven: untangling anthropogenic pressures. Hydrobiologia 681 (1):73-84.

Wright, P J; Gibb, F M; Gibb, I M and Millar, C P (2011) 'Reproductive investment in the North Sea haddock: temporal and spatial variation', Marine Ecology-Progress Series , 432, 149-160.

Wright, P J; Millar, C P and Gibb, F M (2011) Intrastock differences in maturation schedules of Atlantic cod, Gadus morhua. ICES Journal of Marine Science 68 (9):1918-1927.

Yates, K; Pollard, P; Davies, I M; Webster, L and Moffat, C F (2011) Application of silicone rubber passive samplers to investigate the bioaccumulation of PAHs by Nereis virens from marine sediments. Environmental Pollution, 159 (12):3351-3356.